Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: DA.PVG.1AV1-(D1Rat193-D1Rat68)/Kini

Symbol: DA.PVG.1AV1-(D1Rat193-D1Rat68)/Kini
Strain: DA.PVG.1AV1-(D1Rat193-D1Rat68)
Substrain: Kini
RGD ID: 6893554
Citation ID: RRID:RGD_6893554
Ontology ID: RS:0003311
Also Known As: DA.PVG.1AV1-(D1Rat193-D1Rat68)/Kini; DA.PVG.1AV1-Eae31; NBRP Rat No: 0681
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: Center for Molecular Medicine, Neuroimmunology Unit, Karolinska Institutet, Stockholm, Sweden
Description: DA/Kini females were bred to PVG.1AV1/Kini males and male offspring selected for PVG alleles within the fragment. To ensure that mitochondrial DNA was inherited from the DA/Kini strain, female rats were from the DA/Kini strain throughout the breeding program.
Coat Color: agouti
Last Known Status: Cryopreserved Sperm
Research Usage Neurobiology
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21178,810,256 - 188,377,506RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01193,968,438 - 205,603,226RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01201,022,827 - 212,591,221RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41183,163,129 - 193,070,197RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. Olsson Personal communication between Dr. Olsson and the RGD curators.
2. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Rat193)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21178,810,256 - 178,810,465 (-)MAPPER
Rnor_6.01193,968,438 - 193,968,646NCBI
Rnor_5.01201,022,827 - 201,023,035UniSTS
RGSC_v3.41183,163,129 - 183,163,338RGD
RGSC_v3.41183,163,130 - 183,163,338UniSTS
RGSC_v3.11183,304,795 - 183,305,004RGD
Celera1176,493,113 - 176,493,323UniSTS
SHRSP x BN Map190.2799RGD
SHRSP x BN Map190.2799UniSTS
FHH x ACI Map186.55RGD
Cytogenetic Map1q36UniSTS

Flank 2 / 1 (D1Rat68)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21188,377,360 - 188,377,506 (+)MAPPER
Rnor_6.01205,603,081 - 205,603,226NCBI
Rnor_5.01212,591,076 - 212,591,221UniSTS
RGSC_v3.41193,069,836 - 193,070,197RGD
RGSC_v3.41193,070,039 - 193,070,184UniSTS
RGSC_v3.11193,219,920 - 193,220,065RGD
Celera1186,117,126 - 186,117,271UniSTS
RH 3.4 Map11433.4UniSTS
RH 3.4 Map11433.4RGD
RH 2.0 Map11014.7RGD
SHRSP x BN Map197.04RGD
FHH x ACI Map191.06RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_reproduction Good breeding performance. 1302502

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-04-18 DA.PVG.1AV1-(D1Rat193-D1Rat68)/Kini    DA.PVG.1AV1-(D1Rat193-D1Rat68)/Kini    Name updated 68913 APPROVED
2014-04-18 DA.PVG.1AV1-(D1Rat193-D1Rat68)/Kini    DA.PVG.1AV1-(D1Rat193-D1Rat68)/Kini    Name updated 68913 APPROVED
2014-04-18 DA.PVG.1AV1-(D1Rat193-D1Rat68)/Kini    DA.PVG.1AV1-(D1Rat193-D1Rat68)/Kini    Name updated 68913 APPROVED
2014-04-18 DA.PVG.1AV1-(D1Rat193-D1Rat68)/Kini    DA.PVG.1AV1-(D1Rat193-D1Rat68)/Kini    Name updated 68913 APPROVED